Timing and dynamics of single cell gene expression in the arabinose utilization system.

TitleTiming and dynamics of single cell gene expression in the arabinose utilization system.
Publication TypeJournal Article
Year of Publication2008
AuthorsMegerle, JA, Fritz, G, Gerland, U, Jung, K, Rädler, JO
JournalBiophys J
Volume95
Issue4
Pagination2103-15
Date Published2008 Aug
ISSN1542-0086
KeywordsArabinose, Escherichia coli, Escherichia coli Proteins, Gene Expression Profiling, Gene Expression Regulation, Bacterial, Signal Transduction, Transcriptional Activation
Abstract

The arabinose utilization system of Escherichia coli displays a stochastic all-or-nothing response at intermediate levels of arabinose, where the population divides into a fraction catabolizing the sugar at a high rate (on-state) and a fraction not utilizing arabinose (off-state). Here we study this decision process in individual cells, focusing on the dynamics of the transition from the off- to the on-state. Using quantitative time-lapse microscopy, we determine the time delay between inducer addition and fluorescence onset of a GFP reporter. Through independent characterization of the GFP maturation process, we can separate the lag time caused by the reporter from the intrinsic activation time of the arabinose system. The resulting distribution of intrinsic time delays scales inversely with the external arabinose concentration, and is compatible with a simple stochastic model for arabinose uptake. Our findings support the idea that the heterogeneous timing of gene induction is causally related to a broad distribution of uptake proteins at the time of sugar addition.

DOI10.1529/biophysj.107.127191
Alternate JournalBiophys. J.