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Stecher B, Robbiani R, Walker AW, Westendorf AM, Barthel M, Kremer M, Chaffron S, Macpherson AJ, Buer J, Parkhill J. Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota. PLoS Biol. 2007;5(10):2177-89.
Loetscher Y, Wieser A, Lengefeld J, Kaiser P, Schubert S, Heikenwalder M, Hardt W-D, Stecher B. Salmonella transiently reside in luminal neutrophils in the inflamed gut. PLoS One. 2012;7(4):e34812.
Bubendorfer S, Koltai M, Rossmann F, Sourjik V, Thormann KM. Secondary bacterial flagellar system improves bacterial spreading by increasing the directional persistence of swimming. Proc Natl Acad Sci U S A. 2014;111(31):11485-90.
Boehm A, Kaiser M, Li H, Spangler C, Kasper CA, Ackermann M, Kaever V, Sourjik V, Roth V, Jenal U. Second messenger-mediated adjustment of bacterial swimming velocity. Cell. 2010;141(1):107-16.
Gundlach J, Rath H, Herzberg C, Mäder U, Stülke J. Second Messenger Signaling in Bacillus subtilis: Accumulation of Cyclic di-AMP Inhibits Biofilm Formation. Front Microbiol. 2016;7:804.
Kampf J, Gerwig J, Kruse K, Cleverley R, Dormeyer M, Grünberger A, Kohlheyer D, Commichau FM, Lewis RJ, Stülke J. Selective pressure for biofilm formation in Bacillus subtilis: differential effect of mutations in the master regulator SinR on bistability. mBio. 2018;9:e00166-18.
Ackermann M, Stecher B, Freed NE, Songhet P, Hardt W-D, Doebeli M. Self-destructive cooperation mediated by phenotypic noise. Nature. 2008;454(7207):987-90.
Bunk B, Schulz A, Stammen S, Münch R, Warren MJ, Rohde M, Jahn D, Biedendieck R. A short story about a big magic bug. Bioeng Bugs. 2010;1(2):85-91.
Pfeifer E, Hünnefeld M, Popa O, Polen T, Kohlheyer D, Baumgart M, Frunzke J. Silencing of cryptic prophages in Corynebacterium glutamicum. Nucleic Acids Res. 2016;44(21):10117-10131.
Freed NE, Silander OK, Stecher B, Böhm A, Hardt W-D, Ackermann M. A simple screen to identify promoters conferring high levels of phenotypic noise. PLoS Genet. 2008;4(12):e1000307.
Ramalho T, Meyer A, Mückl A, Kapsner U, Gerland U, Simmel FC. Single cell analysis of a bacterial sender-receiver system. PLoS One. 2016;11:e0145829.
Anetzberger C, Schell U, Jung K. Single cell analysis of Vibrio harveyi uncovers functional heterogeneity in response to quorum sensing signals. BMC Microbiol. 2012;12(1):209.
Westermayer SA, Fritz G, Gutiérrez J, Megerle JA, Weißl MP, Schnetz K, Gerland U, Rädler JO. Single-cell characterization of metabolic switching in the sugar phosphotransferase system of Escherichia coli. Mol Microbiol. 2016;100:472-485.
Fritz G, Megerle JA, Westermayer SA, Brick D, Heermann R, Jung K, Rädler JO, Gerland U. Single cell kinetics of phenotypic switching in the arabinose utilization system of E. coli. PLoS One. 2014;9(2):e89532.
Grünberger A, Wiechert W, Kohlheyer D. Single-cell microfluidics: opportunity for bioprocess development. Curr Opin Biotechnol. 2014;29C:15-23.
Vilhena C, Kaganovitch E, Shin JY, Grünberger A, Behr S, Kristoficova I, Brameyer S, Kohlheyer D, Jung K. A single cell view of the BtsSR/YpdAB pyruvate sensing network in Escherichia coli and its biological relevance. J. Bacteriol. 2018;200:e00536-17.
Bahlawane C, McIntosh M, Krol E, Becker A. Sinorhizobium meliloti regulator MucR couples exopolysaccharide synthesis and motility. Mol Plant Microbe Interact. 2008;21(11):1498-509.
Schoenfelder SMK, Lange C, Prakash SA, Marincola G, Lerch MF, Wencker FDR, Forstner KU, Sharma CM, Ziebuhr W. The small non-coding RNA RsaE influences extracellular matrix composition in Staphylococcus epidermidis biofilm communities. PLoS Pathog. 2019;15:e1007618.
Kröger C, Rothhardt JE, Brokatzky D, Felsl A, Kary SC, Heermann R, Fuchs TM. The small RNA RssR regulates myo-inositol degradation by Salmonella enterica. Sci. Rep. 2018;8(1):17739.
Czuppon P, Pfaffelhuber P. Some limit results for Markov chains indexed by trees. Elec. Comm. Probab. 2014;19(77):1-11.
Hense BA, Müller J, Kuttler C, Hartmann A. Spatial heterogeneity of autoinducer regulation systems. Sensors (Basel). 2012;12(4):4156-71.
van Vliet S, Dal Co A, Winkler AR, Spriewald S, Stecher B, Ackermann M. Spatially Correlated Gene Expression in Bacterial Groups: The Role of Lineage History, Spatial Gradients, and Cell-Cell Interactions. Cell Syst. 2018;6(4):496-507.
Czuppon P, Pfaffelhuber P. A spatial model for selection and cooperation. J Appl Probab. 2017;54(2):522-539.
Klauck G, Serra DO, Possling A, Hengge R. Spatial organisation of different sigma factor activities and c-di-GMP signalling within the 3D landscape of a bacterial biofilm. Open Biol. 2018;8:180066.
Grünberger A, Probst C, Helfrich S, Nanda A, Stute B, Wiechert W, von Lieres E, Nöh K, Frunzke J, Kohlheyer D. Spatiotemporal microbial single-cell analysis using a high-throughput microfluidics cultivation platform. Cytometry A. 2015.

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